NCBI
NCBI Taxonomy taxdump · 2026-10-23taxid: 39491
Bacteria > Bacillota > Clostridia > Lachnospirales > Lachnospiraceae > Agathobacter > Agathobacter rectalis
Agathobacter rectalis
Species in genus Agathobacter, family Lachnospiraceae (order Lachnospirales). (from NCBI Taxonomy lineage)
Names over time
Loading the names
Cross-database view
GTDB
Roseburia rectalis
id: s__Roseburia rectalis · GTDB R232
At its weakest, linked by GTDB's own NCBI species id rather than the genome's raw one.
d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia;s__Roseburia rectalis
Name differs between releases: Name differs across GTDB releases.
SILVA
[Eubacterium] rectale
id: AY169428 · SILVA 138.2
Linked by name — the SILVA table we ingest carries no NCBI taxid, so the binomial is the only join.
Bacteria;Bacillota;Clostridia;Lachnospirales;Lachnospiraceae;Agathobacter;
Name differs between releases: Name differs across SILVA releases.
Greengenes2
Agathobacter rectalis
id: Agathobacter rectalis · Greengenes2 2024.09
Linked via GTDB R220 genome accessions — the same physical genomes, not a name match.
d__Bacteria; p__Bacillota_A_368345; c__Clostridia_258483; o__Lachnospirales; f__Lachnospiraceae; g__Agathobacter_164117; s__Agathobacter rectalis
eHOMD
release 4.2No record in eHOMD 4.2.
Each panel shows one release. Switch a release to see how that database's answer changes — the taxon is held fixed by NCBI taxid, so every panel describes the same organism. Each panel also says how it was linked; how the databases are joined explains the routes.
Lineage by rank
| rank | NCBI | GTDB R232 | SILVA 138.2 | Greengenes2 2024.09 |
|---|---|---|---|---|
| domain | Bacteria | Bacteria | Bacteria | Bacteria |
| phylum | Bacillota | Bacillota | Bacillota | first rank that differs from NCBI: Bacillota_A_368345 |
| class | Clostridia | Clostridia | Clostridia | Clostridia_258483 |
| order | Lachnospirales | Lachnospirales | Lachnospirales | Lachnospirales |
| family | Lachnospiraceae | Lachnospiraceae | Lachnospiraceae | Lachnospiraceae |
| genus | Agathobacter | first rank that differs from NCBI: Roseburia | Agathobacter | Agathobacter_164117 |
| species | Agathobacter rectalis | Roseburia rectalis | — | Agathobacter rectalis |
Each column is the release its box shows. marks the first rank at which a database's name differs from NCBI's, by exact text; a suffix such as _A counts. SILVA's path and eHOMD's columns end at genus, so their species row is blank; the box above names the species. Levels a source labels outside these seven ranks are in the API's ranks and not drawn here.
Names in NCBI
from NCBI Taxonomy taxdump · 2026-10-23- Agathobacter rectaliscurrent
- Eubacterium rectale (Hauduroy et al. 1937) Prevot 1938 (Approved Lists 1980)synonym
- Pseudobacterium rectalesynonym
- s__Roseburia rectalisequivalent
Other names in these databases
GTDB R232
- Roseburia rectalis
- Barnesiella intestinihominis
- Alistipes putredinis
- Bacteroides uniformis
- CAG-115 sp003531585
- CAG-177 sp000431775
- CAG-217 sp000436335
- CAG-217 sp963638105
- CAG-267 sp001917135
- CAG-475 sp963593735
- Dialister hominis
- Dialister succinatiphilus
- Enterosoma sp963600815
- Gallintestinimicrobium propionicum
- Hominicoprocola sp900552015
- Intestinimonas butyriciproducens
- Prevotella pectinovora
- RUG14243 sp963637505
- Roseburia faecis
- Roseburia sp905209075
- Roseburia sp934365945
- Sodaliphilus sp963625945
- Spyradenecus sp963608725
- UBA4636 sp963650915
- UBA6398 sp003150315
- Vescimonas sp900313295
- W0P33-017 sp934320655
- W2P13-069 sp963590525
SILVA 138.2
- [Eubacterium] rectale
- [Eubacterium] rectale ATCC 33656
- [Eubacterium] rectale DSM 17629
- [Eubacterium] rectale M104/1