One name. Five databases.
Bacterial taxonomy drifts between NCBI, GTDB, SILVA, Greengenes2, and eHOMD — at different speeds, with different splits. Search a taxon to see what each database currently calls it, or bulk-translate a whole taxonomy table.
All 37 curated taxa
- Phocaeicola vulgatus / Bacteroides vulgatusstable
Species in genus Phocaeicola, family Bacteroidaceae (order Bacteroidales).
- Clostridioides difficile / Clostridium difficilestable
Species in genus Clostridioides, family Peptostreptococcaceae (order Peptostreptococcales).
- Lacticaseibacillus rhamnosus / Lactobacillus rhamnosusstable
Species in genus Lacticaseibacillus, family Lactobacillaceae (order Lactobacillales).
- Agathobacter rectalis / Eubacterium rectalestable
Species in genus Agathobacter, family Lachnospiraceae (order Lachnospirales).
- Faecalibacterium prausnitzii / Fusobacterium prausnitziisplits
Species in genus Faecalibacterium, family Oscillospiraceae (order Eubacteriales).
- Akkermansia muciniphila / s__VGWG01 sp945870025splits
Species in genus Akkermansia, family Akkermansiaceae (order Verrucomicrobiales).
- Bacteroides fragilis / Fusiformis fragilissplits
Species in genus Bacteroides, family Bacteroidaceae (order Bacteroidales).
- Bacteroides thetaiotaomicron / Bacillus thetaiotaomicronstable
Species in genus Bacteroides, family Bacteroidaceae (order Bacteroidales).
- Bacteroides uniformisstable
Species in genus Bacteroides, family Bacteroidaceae (order Bacteroidales).
- Bacteroides ovatus / Pasteurella ovatasplits
Species in genus Bacteroides, family Bacteroidaceae (order Bacteroidales).
- Escherichia coli / Bacillus colisplits
Species in genus Escherichia, family Enterobacteriaceae (order Enterobacterales).
- Enterococcus faecalis / Micrococcus ovalissplits
Species in genus Enterococcus, family Enterococcaceae (order Lactobacillales).
- Bifidobacterium longumsplits
Species in genus Bifidobacterium, family Bifidobacteriaceae (order Bifidobacteriales).
- Bifidobacterium adolescentis / Bifidobacterium faecalestable
Species in genus Bifidobacterium, family Bifidobacteriaceae (order Bifidobacteriales).
- Roseburia intestinalisstable
Species in genus Roseburia, family Lachnospiraceae (order Lachnospirales).
- Ruminococcus bromiisplits
Species in genus Ruminococcus, family Oscillospiraceae (order Eubacteriales).
- Mediterraneibacter gnavus / Hominicoccus gnavusstable
Species in genus Mediterraneibacter, family Lachnospiraceae (order Lachnospirales).
- Segatella copri / Prevotella coprisplits
Species in genus Segatella, family Prevotellaceae (order Bacteroidales).
- Fusobacterium nucleatum / Corynebacterium fusiformesplits
Species in genus Fusobacterium, family Fusobacteriaceae (order Fusobacteriales).
- Lactiplantibacillus plantarum / Lactobacillus arabinosusstable
Species in genus Lactiplantibacillus, family Lactobacillaceae (order Lactobacillales).
- Limosilactobacillus reuteri / Lactobacillus reuterisplits
Species in genus Limosilactobacillus, family Lactobacillaceae (order Lactobacillales).
- Bilophila wadsworthiastable
Species in genus Bilophila, family Desulfovibrionaceae (order Desulfovibrionales).
- Parabacteroides distasonis / Bacteroides distasonissplits
Species in genus Parabacteroides, family Tannerellaceae (order Bacteroidales).
- Anaerobutyricum hallii / Eubacterium halliistable
Species in genus Anaerobutyricum, family Lachnospiraceae (order Lachnospirales).
- Streptococcus thermophilusstable
Species in genus Streptococcus, family Streptococcaceae (order Lactobacillales).
- Bifidobacterium breve / Bifidobacterium parvulorumstable
Species in genus Bifidobacterium, family Bifidobacteriaceae (order Bifidobacteriales).
- Bifidobacterium animalissplits
Species in genus Bifidobacterium, family Bifidobacteriaceae (order Bifidobacteriales).
- Lactobacillus acidophilus / Bacillus acidophilussplits
Species in genus Lactobacillus, family Lactobacillaceae (order Lactobacillales).
- Veillonella parvula / Micrococcus gazogenessplits
Species in genus Veillonella, family Veillonellaceae (order Veillonellales).
- Allocoprococcus comes / Coprococcus comessplits
Species in genus Allocoprococcus, family Lachnospiraceae (order Lachnospirales).
- Blautia obeum / Ruminococcus obeumsplits
Species in genus Blautia, family Lachnospiraceae (order Lachnospirales).
- Bacteroides caccaestable
Species in genus Bacteroides, family Bacteroidaceae (order Bacteroidales).
- Helicobacter pylori / Campylobacter pyloridissplits
Species in genus Helicobacter, family Helicobacteraceae (order Campylobacterales).
- Salmonella enterica / Bacillus cholerae-suisstable
Species in genus Salmonella, family Enterobacteriaceae (order Enterobacterales).
- Klebsiella pneumoniae / Bacillus pneumoniaesplits
Species in genus Klebsiella, family Enterobacteriaceae (order Enterobacterales).
- Staphylococcus aureus / Micrococcus aureusstable
Species in genus Staphylococcus, family Staphylococcaceae (order Caryophanales).
- Pseudomonas aeruginosa / Bacillus aeruginosussplits
Species in genus Pseudomonas, family Pseudomonadaceae (order Pseudomonadales).
Got a taxonomy table? Bulk translate it →
Paste a list of names, NCBI taxids, or QIIME2 / DADA2 / MetaPhlAn lineage strings. Get the current name in each database, flag the 1→many splits, download as TSV.